Image Drole: Imagej Macro Number Of Slices

Imagej Macro Number Of Slices

Save a tool set in the imagejmacrostoolsets folder and it will appear in menu at the right end of the toolbar. Dear all i tried to analysis histogram result of a tif file and save it to txt or xls.

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For example changevalues 055 changes all pixels less than 5 to 5 and changevalues 0x0000ff0x0000ff0xff0000 changes all blue pixels in an rgb image to red.

Imagej macro number of slices. Imagestacksdelete slice deletes the currently displayed slice in a stack. Getslicelabels public javalangstring getslicelabels returns the slice labels as an array of strings. In this line instead of group41 this was the case where the z stack had 123 slices so each channel had 123341 i would like for the macro to get the number of slices and divide it by 3 so that i dont have to write it everytime.

Deleting a single slice. I used the macro command setslice then setpixel to select slice then change the pixel intensity to 256. A macro file can contain up to eight macro tools along with any number of ordinary macros.

Some of these functions are described below. When i do histogram manually i got a figure as. Since there is no categorized index you might want to use the search facility on this page.

His seems to work for slice 1 only. A macro file macro set that contains macro tools is called a tool set. And list the result as the value 0 has 102976919 count.

Stacks with the same number of slices can be concatenated as a 4d hyperstacks if open as 4d image is checked. Note that the size of the returned array may be greater than the number of slices currently in the stack. Returns null if the stack is empty or the label of the first slice is null.

When i run the histogram by macro the left line of the list became bin start. But rather than taking a slice every certain step it combines a group of slices and project them on a single slice. The slices in a stack can be manipulated in many ways.

There are quite a lot of macros on the imagej website and specifically example macros including a few from the macro workshop at the imagej conference 2010. In this case chosen stacks will be appended as time points. Hello i wrote the following macro to make a 10 slices.

I need to add a white box in certain location in all the images. The size of the groups is configurable and must be a divisor of the total number of slice. Returns the number of slices in this stack.

Rungrouped zprojector group41 projectionmax intensity. In this case chosen stacks will be appended as time points. The grouped zprojector acts a bit like the substack maker for it allows to reduce the number of frame within a stack.

In imagej 152d or later use changevalues nannanvalue to replaces nan values.

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